Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015791190.1_cds_XP_016505998.1_1854
CDS Infomation

[gene=LOC107823800] [db_xref=GeneID:107823800] [protein=homeobox protein ATH1-like] [protein_id=XP_016505998.1] [location=complement(join(2156..2320,2462..2522,2698..3053,3170..4279))] [gbkey=CDS]
Sequence

ATGGCGGAACCTCATACTATTATAGACGAAAATTTTCTTCATACAGCCAGTATTCCCATT
AGTTTCCCCGATAGAGTTGGTCTGAACAATCAAAACCACGTTATGGACGGACAAAACCAC
ATCATGGATGGACATGAAATTCCTATTCCTTTTATGCTGCAAGGAGAAGCCATAAACAGT
TCTCAAGATTTTCTAAGTCTACCAAATTTTCCTCGAGCTGTTGACACCGGAGCAATCCAC
AGTGTGCTACCAATGAGAAACAGAATAAAGGAGTTTTCGCTGAGTACTTCATATCCAATC
AATAACGCTTACACAGAGGATCAGTATATGGAGGGAATACCGATTTCTGCTGTGTCTCTT
GCAAATCTTTTGGCTACTAGGAACGCTATGCCCGAGAATCATGAAAATTTAGCGGCATTG
GCTTCCTTATCACATCCTGTAGAAGGTCATAAAACTGATGTTCTAGACTATCCTACCATG
TTAAATCATTCGTTTGGATCCTATAGAAACTATGAGTTTGATGGTGTCCCGGAAATTGCT
GGGACAATTGTAGGACGAACAGGATCCCAACCTTTCCAATTATCTCATGAGAATGTGAAT
TCAAACACATGGTTCTCATCAGAAACTGCTAGTATGAATTCCGACAGTCCCTCTGGATCC
TCCTCCAGATTTAGCAATGAGCTTTCTTTAAGTCTTACATCAACACAATCTGGTGTTGCA
TGTGGGACTACTATCCGGGACCAATGCTCGGATATAAGCTGCTCCGGTGTCACCAACCAT
GCTTTCCCTCAAAGACGGTTTGATTCAGAGTTAACGTCTTGCAACAGCAGAAATCTGTCT
TTAAACTTTGGCTCATACAAACCAGTCCACCTTTCGCAATTCTTAACCGGATCAAGATAT
CTTCGTGTGATGCAAGAAATACTTTCTGAAATGGCTCATTTGTCACTTCAAAATCATAAC
TTGGTAGGCTATAGAGGAAATGGGGCAGAATACGGTGCTAACACTTCTTTTACTTTGAGT
TCTGATGATTTGCCTGATGAAGACCGTAGAATCATTGGTCAAATGAACTCTGAAGCAAAG
AAAAAACATCTGGTGGCTTTGTTGCAAGTGGTTGATGATCAATACAACCAATGCTTGGAT
GAGATTCATATGGTTATATCCGCGTTTCATGCTGTGACCGAGTTGAATCCTAGCATACAT
GCTCGTTTCGCCCTTCAAACTATTTCCTCTTTGTACAAAAACCTGAGGGAGAGAATAAGC
AATTACATACTCGCAATGGGAGAACATTTTAATAGAGGAGGAGAAAGGGGAGTAGAGAAA
TCATTTGAAACATCGTTCATTCAAAAGCAATGGGCACTTCAGCAACTAAAAAGGAAAGAT
CATCAGTTATGGAGACCACAGAGAGGCTTGCCGGAAAGATCTGTCTCAGTTTTAAGAGCA
TGGATGTTTCAAAACTTTCTTCACCCATATCCAAAGGATGCAGAGAAGCAATTGCTAGCA
GTAAAAAGTGGATTGACTAGGAGCCAGGTATCTAATTGGTTTATAAATGCTCGAGTTCGT
CTCTGGAAACCAATGATAGAGGAAATGTATGCTGAGATGAATAGAAGGAAAATTCGTACC
GGAAATCATGAAGATGAAACCAACAATCGAAGAAATCACAAAATTGACAATCGTTTATTT
ACTATGAAGTGA

Peptide Sequence

PEP ID

XP_016505998.1
PEP Infomation

PREDICTED: homeobox protein ATH1-like [Nicotiana tabacum]
Sequence

MAEPHTIIDENFLHTASIPISFPDRVGLNNQNHVMDGQNHIMDGHEIPIPFMLQGEAINS
SQDFLSLPNFPRAVDTGAIHSVLPMRNRIKEFSLSTSYPINNAYTEDQYMEGIPISAVSL
ANLLATRNAMPENHENLAALASLSHPVEGHKTDVLDYPTMLNHSFGSYRNYEFDGVPEIA
GTIVGRTGSQPFQLSHENVNSNTWFSSETASMNSDSPSGSSSRFSNELSLSLTSTQSGVA
CGTTIRDQCSDISCSGVTNHAFPQRRFDSELTSCNSRNLSLNFGSYKPVHLSQFLTGSRY
LRVMQEILSEMAHLSLQNHNLVGYRGNGAEYGANTSFTLSSDDLPDEDRRIIGQMNSEAK
KKHLVALLQVVDDQYNQCLDEIHMVISAFHAVTELNPSIHARFALQTISSLYKNLRERIS
NYILAMGEHFNRGGERGVEKSFETSFIQKQWALQQLKRKDHQLWRPQRGLPERSVSVLRA
WMFQNFLHPYPKDAEKQLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNRRKIRT
GNHEDETNNRRNHKIDNRLFTMK

Transcript Sequence

Gene sequence data has not been registered.